Prophane accepts only Scaffold Protein Reports so far. However, you can use this wizard
to generate an artificial Protein Report accepted by Prophane from your Proteome Discoverer data.
To consider all relevant data you have to provide different files (see this manual how to export them):
all PSMs export
use target database to find accession tags
use constant tag (only one accession type)
do not consider contaminations
consider contaminations based on
Dependent on the size of the submitted files processing will take some time.
Thus, please be patient after submission and do not close the window.